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    Home » Cookies

    Butternut Squash Cookies (Paleo, Vegan)

    Published: Dec 16, 2022 · by Katie

    Jump to Recipe·Print Recipe

    These healthy butternut squash cookies are soft and tender with a chewy center. They are made with pureed butternut squash and almond butter, sweetened with coconut sugar and loaded with dark chocolate chips. In addition, these squash cookies are paleo, vegan and gluten free.

    butternut squash cookies on wire cooling rack

    I used my very last home-grown butternut squash to make these cookies. And it was a great decision! The whole family is in love with their chewy texture and the fact that you get a mouthful of chocolate in every bite.

    These vegan butternut squash cookies are made with pureed butternut squash, almond butter, coconut sugar and dark chocolate chips. They have just the right amount of sweetness and are great for a healthy dessert.

    Why You'll Love these Healthy Butternut Squash Cookies

    • gluten free - made with almond butter and almond flour
    • paleo - made with wholesome, real-food ingredients
    • vegan - these squash cookies are egg free
    • dairy free - no butter, no milk
    • easy to make - just mix, scoop and bake!
    gluten-free-vegan-squash-cookies

    Ingredients

    Here's a list of what you need to make these chocolate chip squash cookies:

    • pureed butternut squash - I recommend making your own butternut squash puree instead of buying canned. Homemade tends to be thicker, creamier and better tasting.
    • almond butter - use an unsweetened almond butter made with just dry roasted almonds.
    • coconut oil - to get the proper cookie texture.
    • vanilla extract - for flavor
    • blanched almond flour - these squash cookies are made with almond flour. The best swap would be tigernut flour.
    • coconut sugar - to sweeten the cookies.
    • cinnamon - added for flavor.
    • baking soda - for texture purposes.
    • salt - enhances the flavors
    • dark chocolate chips - because everything is better with chocolate 😉

    How to Puree Butternut Squash

    I pureed my own butternut squash for this recipe. Canned squash should work too, but I have only tested these cookies with homemade squash puree.

    To puree butternut squash, cut the squash, remove the seeds and cut it into cubes. You can cut off the skin if you want, but I didn't. Then place the squash in a steamer pot and steam until tender.

    After steaming, let the squash cool to room temperature. Then place the squash in a food processor or high powered blender and blend until smooth. This will take a little bit of time to get the squash fully pureed. Stop every so often and scrape down the sides and keep blending until you get a nice, creamy texture.

    Store leftover puree in a sealed container in the fridge, up to one week.

    ingredients-in-squash-cookies

    How to Make Butternut Squash Cookies

    These gluten free butternut squash cookies are easy to make - just one bowl needed for mixing and no chilling required. Here are the step-by-step instructions:

    1. First, preheat your oven to 350 degrees F. Line a baking sheet with parchment paper and set aside.
    2. In a medium-sized mixing bowl, combine pureed squash, almond butter, melted coconut oil and vanilla. Mix until well combined.
    3. Stir in the almond flour, coconut sugar, cinnamon, baking soda and salt. Really mix the dough using a spatula or wooden spoon. It should have a consistent texture and be a little oily.
    4. Lastly, fold the chocolate chips into the batter.
    squash-cookie-dough
    1. Use a large cookie scoop (about 2 tablespoons per cookie) to scoop the dough onto the lined baking pan. The cookies spread a bit, but not too much. I recommend leaving about an inch between each cookie.
    2. Place the cookies in the oven and bake at 350 degrees for 12 minutes. After baking, let the cookies cool on the baking sheet for at least 5 minutes. The cookies are very soft right out of the oven, but will firm up once cooled.
    cookie-dough-on-lined-baking-sheet
    baked-cookies
    1. After the squash cookies have cooled, place them on a wire cooling rack. You can pop them in the fridge or freezer to set a bit more. In fact, I find these cookies have the best texture after sitting in the freezer.
    gluten-free-squash-cookies

    Storage

    Place the cookies in an air tight container or baggie. They can be kept in the fridge or freezer and are best eaten within 3 days if stored in the fridge or a month if stored in the freezer.

    FAQ

    Do I have to remove the skin from the squash?

    No, you don't have to remove the skin from the squash if you're pureeing your own.

    Can these squash cookies be made nut free?

    Although I have only made these cookies with almond butter and almond flour, there are a couple swaps you can make to make these cookies nut free.

    Swap the almond butter for sunflower seed butter. And replace the almond flour with tigernut flour or ground sunflower seeds. Just note that sunflower seeds and baking soda react and will make the cookies green once they've cooled.

    paleo-squash-cookies

    More Butternut Squash Recipes

    Looking for more paleo recipes that use butternut squash puree? Here are some favorites from the blog:

    • Muffins on wire cooling rack.
      Chocolate Butternut Squash Muffins (Flourless)
    • Clos up of waffles.
      Healthy Butternut Squash Waffles (No Flour)
    • Butternut Squash Brownies (Gluten Free, Paleo)
    • bowl of paleo squash tots
      Butternut Squash Tots (Gluten Free)
    Print
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    butternut squash cookies on wire cooling rack

    Butternut Squash Cookies (Paleo, Vegan)

    5 Stars 4 Stars 3 Stars 2 Stars 1 Star 5 from 3 reviews
    • Author: Katie
    • Prep Time: 10 minutes
    • Cook Time: 12 minutes
    • Total Time: 22 minutes
    • Yield: 1 dozen cookies 1x
    Print Recipe
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    Description

    These healthy butternut squash cookies are made with pureed butternut squash and almond butter. They're gluten free, paleo and vegan friendly!


    Ingredients

    Scale
    • ½ cup pureed butternut squash*
    • ½ cup almond butter (just almonds)
    • 2 Tbsp coconut oil, melted
    • 1 tsp vanilla extract
    • ⅓ cup blanched almond flour (35g)
    • ⅓ cup coconut sugar
    • 1 tsp cinnamon
    • ½ tsp baking soda
    • ¼ tsp salt
    • ½ cup dark chocolate chips


    Instructions

    1. Preheat your oven to 350 degrees F. Line a baking sheet with parchment paper and set aside.
    2. In a medium-sized mixing bowl, combine pureed squash, almond butter, melted coconut oil and vanilla. Mix until well combined.
    3. Stir in the almond flour, coconut sugar, cinnamon, baking soda and salt. Really mix the dough using a spatula or wooden spoon. It should have a consistent texture and be a little oily.
    4. Fold the chocolate chips into the batter.
    5. Use a large cookie scoop (about 2 tablespoons per cookie) to scoop the dough onto the lined baking sheet. The cookies spread a bit, but not too much. I recommend leaving about an inch between each cookie.
    6. Place the cookies in the oven and bake at 350 degrees for 12 minutes.
    7. After baking, let the cookies cool on the baking sheet for at least 5 minutes, then transfer them to a wire cooling rack. The cookies are very soft right out of the oven, but will firm up once cooled.
    8. Store cookies in and air tight container or baggie in the fridge up to 3 days, or the freezer up to one month.  (I like them best stored in the freezer.)


    Notes

    *I pureed my own butternut squash, but canned should work too.

    To puree butternut squash, cut the squash in half, remove the seeds, then cut it into cubes.  You may remove the skin, but I didn't.  Place the squash in a steamer pot and steam until tender.  After steaming, cool the squash to room temperature.  Lastly, place the squash in a food processor or high powered blender and blend until smooth.

    Did you make this recipe?

    Share a photo and tag me — I can't wait to see what you've made!

    pinterest image for chocolate chip butternut squash cookies
    « Mini Pumpkin Pies (Paleo, Gluten Free)
    Paleo Chocolate Peppermint Cookies (Gluten Free) »

    Reader Interactions

    Comments

    1. Katie

      December 16, 2022 at 6:38 am

      My family and I love these butternut squash cookies and we hope you do too! Enjoy!

      Reply
    2. Cindy Nguyen

      July 25, 2025 at 9:01 am

      Love the cookies which are loaded with healthy ingredients. Thank you, Katie.

      Reply
      • Katie

        July 25, 2025 at 4:26 pm

        I'm so glad you enjoyed them! Thank you for leaving a review 🙂

        Reply
    3. Cindy

      December 10, 2025 at 4:34 pm

      These were surprisingly good! I thought at first there wasn't enough flour because the batter is so moist, so I add a little oats. The cookies didn't need it. As they baked I could see them firming up. They are so moist yet they hold their shape so well. The flavor is spot on.
      The other change I made is with the sweetener. I only had a little coconut sugar on hand so I used liquid stevia, vanilla flavored, and omitted the vanilla. I also ran out of almond butter so I used macadamia nut butter.
      There's no doubt I will make this again.

      Reply
      • Katie

        December 11, 2025 at 7:27 am

        I'm so glad you liked them! Thank you for sharing your swaps 🙂

        Reply

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    I'm Katie and I have a passion for baking healthy treats using real, whole food ingredients. On my blog you'll find a variety of sweet and savory recipes, all gluten free and dairy free. My mission is to make baking nutritious, delicious, simple and family friendly.

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