These healthy chocolate peppermint thumbprint cookies consist of a crunchy chocolate cookie that's filled with a mint chocolate fudge and topped with crushed candy canes. They're lightly sweetened, crisp and have a lovely mint chocolate flavor. In addition, these thumbprint cookies are gluten free, dairy free, paleo and vegan.

While I love all the holiday flavors, there's nothing better than chocolate and peppermint in my book! And these chocolate peppermint thumbprints are seriously the best holiday cookies. I made them a handful of times to get the recipe just right and each time the batch didn't last longer than a day or two.
These mint chocolate thumbprints have a crisp chocolate cookie base that's filled with a creamy fudge and then topped with candy cane pieces. There's mint in both the cookie and the fudge, which brings out a bold mint flavor.
As far as cookies go, these ones are much healthier than your typical recipe. They're made with almond flour and cocoa powder, sweetened with maple syrup and topped with naturally colored candy canes. These cookies are also gluten free, dairy free, paleo and vegan!
Why You'll Love these Thumbprint Cookies
- Gluten Free and Grain Free - made with almond flour, tapioca starch and cocoa powder
- Refined Sugar Free - sweetened with maple syrup
- Healthier than Your Average Cookie
- Great For Many Diets - paleo, vegan, gluten free, grain free, dairy free, egg free, refined sugar free
- Easy to Make - they have a no-chill cookie dough that's made in one bowl, shaped and then baked.
Ingredients
These chocolate peppermint thumbprint cookies require just a handful of simple ingredients. The full recipe can be found in the recipe card below, but here is a list of what you'll need:
- blanched almond flour - if you can't consume almonds, tigernut flour would be the best substitute.
- cocoa powder - I recommend an organic Dutch processed cocoa powder.
- tapioca starch - also known as tapioca flour. This ingredient is required for texture purposes. The best substitute is arrowroot starch.
- salt - to enhance the flavors.
- palm shortening - the best alternative is butter, however, with this swap you may need to chill the dough.
- maple syrup - to sweeten the cookies. You may swap the maple syrup with any other liquid sweetener, but maple syrup goes well with the chocolate mint flavor of these cookies.
- vanilla extract - for flavor.
- peppermint flavoring - you'll need this ingredient in both the cookie dough and the fudge filling. If you don't have peppermint flavoring, peppermint extract will work instead.
- dark chocolate - for the fudge filling. You can also drizzle dark chocolate over the cookies for decoration.
- almond butter - for the fudge filling. I like almond butter because of its neutral flavor, but any other nut or seed butter will work.
- candy canes - these are optional and can be swapped with festive sprinkles, shredded coconut or chopped nuts. I used organic candy canes that are dye-free and corn syrup free.
How to Make Chocolate Peppermint Thumbprint Cookies
These thumbprint cookies require quite a few steps, but I promise each step is super easy! The cookie dough is no-chill, shapes easily and bakes in minutes. The filling and topping are also no-fuss. Here are the steps:
- Preheat oven to 350 degrees F. Line a baking sheet with parchment paper and set aside.
- Make the cookie dough: In a large bowl, combine the almond flour, cocoa powder, tapioca starch and salt.
- Mix in the shortening, maple syrup, vanilla and peppermint. First mix with a fork or spatula, then use your hands to knead the dough. It may appear to dry at first, just keep kneading until it has a consistent, playdough-like texture.
- Scoop 1 tablespoon of the cookie dough, roll into a ball and slightly flatten on the lined baking sheet. Press your thumb into the center of the cookie to make a circular indent. Repeat for all cookies.
- Bake: Place the cookies in the oven and bake at 350 degrees for 10-12 minutes.
- After baking, remove the cookies from the oven and use a ½ tablespoon measuring spoon to reform the indents in the cookies. Then transfer the cookies to a wire cooling rack.
- Make the Filling: Melt the dark chocolate in a small microwaveable bowl at 20-30 second intervals, stirring between. Once melted, mix in the almond butter and peppermint.
- Use a small spoon to scoop the filling into the cooled cookies.
- Place the cookies in the freezer for 10-15 minutes for the filling to harden.
- Add Topping: Melt the dark chocolate in a small microwavable bowl. Remove the cookies from the freezer and drizzle the chocolate over the cookies. Top with crushed candy cane pieces.
Tips and Tricks
- Measure ingredients by weight: this ensures accurate measurements. I use a small kitchen scale to weight out most of my ingredients.
- Don't substitute ingredients: I have tested these cookies many times with great success, but I have only used the ingredients given in the recipe. If you make substitutions you may get undesirable results.
- Use organic candy canes: conventional candy canes are often made with corn syrup and food dyes like red 40. You can buy organic candy canes that taste just as good, but are much healthier and don't contain harmful ingredients.
Storage
Place cookies in an airtight container or baggie. They can be stored at room temperature for a week, in the fridge up to two weeks, or the freezer up to two months. Please note, the candy canes may get a little melty in the fridge (due to moisture).
FAQ
No, these cookies hold their shape for the most part because they don't have any baking soda or baking powder in them.
The best swaps are to use tigernut flour in place of almond flour and sunflower seed butter in place of the almond butter.
No, candy canes are not paleo. If you want this recipe to be strict paleo, then omit the candy canes, or swap them with something else. Some good options include: shredded coconut, chopped nuts or seeds, mini dark chocolate chips.
If your dough is too dry it will crack when you're making your indentations. To solve this, add another tablespoon of maple syrup.
More recipes you'll love
Looking for other recipes like this? Try these
Healthy Chocolate Peppermint Thumbprint Cookies (Gluten Free)
- Prep Time: 25 minutes
- Cook Time: 10 minutes
- Total Time: 35 minutes
- Yield: 1 dozen cookies 1x
Description
These chocolate peppermint thumbprint cookies are crunchy with a rich chocolate and peppermint flavor. They're the ultimate healthy holiday cookie recipe - gluten free, dairy free, paleo and vegan friendly!
Ingredients
Cookies
- 1 cup blanched almond flour (90g)
- ¼ cup cocoa powder (22g)
- ¼ cup tapioca starch (30g)
- ¼ tsp salt
- ¼ cup palm shortening, room temperature (43g)
- 3 Tbsp maple syrup
- 1 tsp vanilla extract
- 1 tsp peppermint flavoring*
Filling
- 3 Tbsp dark chocolate chips
- 2 Tbsp almond butter
- ½ tsp peppermint flavoring*
Topping (optional)
- 2 Tbsp dark chocolate chips (for drizzle)
- 1 organic candy cane, crushed
Instructions
- Preheat oven to 350 degrees F. Line a baking sheet with parchment paper and set aside.
- Make the cookies: In a large bowl, combine the almond flour, cocoa powder, tapioca starch and salt.
- Mix in the shortening, maple syrup, vanilla and peppermint. First mix with a fork or spatula, then use your hands to knead the dough. It may appear to dry at first, just keep kneading until it has a consistent, playdough-like texture.
- Scoop 1 tablespoon of the cookie dough, roll into a ball and slightly flatten on the lined baking sheet. Press your thumb into the center of the cookie to make a circular indent. Repeat for all cookies.
- Place the cookies in the oven and bake at 350 degrees for 10-12 minutes.
- After baking, remove the cookies from the oven and use a ½ tablespoon measuring spoon to reform the indents in the cookies. Then transfer the cookies to a wire cooling rack.
- Make the Filling: Melt the dark chocolate in a small microwaveable bowl at 20-30 second intervals, stirring between. Once melted, mix in the almond butter and peppermint.
- Use a small spoon to scoop the filling into the cooled cookies.
- Place the cookies in the freezer for 10-15 minutes for the filling to harden.
- Add Topping: Melt the dark chocolate in a small microwavable bowl. Remove the cookies from the freezer and drizzle the chocolate over the cookies. Top with crushed candy cane pieces.
Notes
*I used organic peppermint flavoring which is a mixture of sunflower oil and peppermint oil. If using peppermint extract, be sure to adjust the quantity to taste.
Katie
My family and I love these cookies! Enjoy!
Jennifer Smith
I am in Ottawa Canada and can't find palm shortening anywhere, can you suggest a substitute??? I'd love to make these for my office party.
Katie
Butter or ghee will be the best substitute, but you may have to chill the dough if you use them.